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Guidance on navigating the research gap in medical literature and points of caution
*Corresponding author: Tamer A. El-Sobky, Surgical-based Department, Orthopaedic Unit, Universiti Kuala Lumpur, Royal College of Medicine Perak (UniKL RCMP), Malaysia. tamer.ahmed@med.asu.edu.eg
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Received: ,
Accepted: ,
How to cite this article: El-Sobky TA, Mahmoud S. Guidance on navigating the research gap in medical literature and points of caution. J Musculoskelet Surg Res. doi: 10.25259/JMSR_586_2025
Abstract
Delineating a relevant research gap is an intricate and multifold process. Research gaps may arise from deficiencies in research design, execution, or reporting of published studies. Therefore, study conclusions and interpretations should not be taken for granted. They should rather be weighed against the particulars of research design and execution. Basing research proposal decisions solely on unverified study conclusions and interpretations could lead to the delineation of irrelevant research gaps, wasteful research efforts, and the propagation of inaccurate information. Accurate outlining of a relevant research gap requires competent academic critical appraisal skills. Envisioning research ideas that are relevant to clinical practice or public health requires a thorough and systematic reassessment of the existing literature for breaches of evidence and integrity. The objective of this report was to provide guidance on the essential skills required to elaborate a clear and scientifically valid research gap and a research hypothesis thereof. Furthermore, we aimed to highlight areas of concern or potential pitfalls that require attention.
Keywords
Academic education
Evidence-based practice
Faculty training
Knowledge discovery
Research methods
INTRODUCTION
A research gap is a lack of knowledge within the community about a lingering scientific problem or topic. The sources of this knowledge gap, also known as the evidence gap, could be attributed to a lack of published research on a topic or study design flaws and a lack of methodological rigor in the published literature. Another overlooked source of research gaps is misreporting or misinterpretation of the conclusions of published literature. The previous can result in a lack of evidence, or in conflicting or unreliable evidence.[1]
A compelling introduction informs readers of the significance and potential impact of the presented research. A vague or insufficient introduction may overshadow the importance and novelty of a research point. A well-constructed introduction section should provide relevant background information, accurately cite relevant literature, unravel all novel facets of the research gap, and propose a practical strategy for closing it. The introduction should conclude with clear, well-defined objectives [Figure 1].[2-5]

- A roadmap to writing a purposeful introduction of a medical manuscript. Adapted from El-Sobky, 2021.
Accurate delineation of the research gap or problem can alert public health authorities to shortcomings in the system and help identify and address deficiencies in national disease surveillance programs. Ultimately, bridging the research gap could positively influence the quality of life of the patients concerned. Moreover, it could help develop more efficient treatment modalities, reflect on health economics, and improve resource utilization.[1,2] The clear identification of the research gap could help readers judge the appropriateness of the selected research design and methodological approach in regard to study type, sampling methods, and outcome tools. The accurate delineation of a research gap in a particular specialty can spark innovative or uninvestigated research ideas across other medical specialties. The research or knowledge gap can be attributed to deficiencies in three fundamental research processes, namely (1) research design, (2) research performance, and (3) research reporting/writing. Bridging a lingering research gap requires adequate identification, analysis, and interpretation of the contributing factors. This could be achieved through a comprehensive and well-targeted literature review [Figure 2].[5] For instance, multilevel orthopedic surgery for children with cerebral palsy is widely practiced and effective in improving gait parameters and function on the short- and intermediate term. However, its long-term outcomes, especially in adults with cerebral palsy, remain relatively underexplored, leaving a significant research design gap.[6]

- How to present and stratify the research gap in the introduction. (Adapted from El-Sobky, 2021).
The objective of this paper was to provide guidance on the essential steps required to elaborate a clear and scientifically valid research gap and a research question thereof. Furthermore, we aimed to highlight the relevant areas of concern that need to be addressed.
HOW TO TACKLE THE LITERATURE CONTROVERSY
Pinpointing the nature of the literature controversies or deficiencies can simultaneously reveal the innovative aspects of the research point. Research gaps can result from flaws in the study design/plan or research execution. For example, a thorough literature review may reveal that deficient study designs are a main cause of the insufficient evidence on the accuracy of a diagnostic test or the efficiency of a treatment modality. Failure to neutralize the effects of cofounding variables on the investigated variables is a common methodological design or performance flaw.[7,8] For instance, failure to create homogeneous study groups in a matched comparative study or a randomized control trial can compromise evidence on the comparative effectiveness of a treatment modality or on the cause-and-effect relationship, respectively. This methodological pitfall could stem from a defective research design or flaws in real-time research execution. Therefore, overcoming deficiencies in previous study designs will likely yield stronger evidence. This represents an innovative dimension of the research work. Furthermore, a lack of credible evidence may be due to non-technical limitations such as shortcomings in research infrastructure, administrative and health system issues, and funding challenges [Figure 3].[7,8]

- Navigating the research gap.
Misreported, misinterpreted, or misworded study conclusions are important contributors to the knowledge gap. Conclusions of abstracts or summaries should not be taken for granted. They should instead be evaluated against the study’s methodology, results, and stated objectives as reported in the full-text article. The aim is to ensure that the conclusions of any published study are supported by its methodology and results.[8-11] For example, the undue generalization of a study’s conclusions to other patient populations or diseases not originally investigated could lead to the dissemination of misinformation. Routinely equating statistical significance to clinical significance is another cause of misleading conclusions. Likewise, interpreting mere associative relationships between study variables as a causal relationship – cause-and-effect – can lead to misleading conclusions.[9,10,12]
The retraction of an alarming and exceptionally high number of coronavirus (COVID-19) papers is a clear example of the importance of vetting the literature for methodological rigor. This is aimed at spotting unverified or unsupported research claims, unduly generalized conclusions, and unjustified treatment recommendations that should always be based on the study’s context and in view of its limitations.[7,8,11] Scientific evolution is a cumulative process in which novel research builds upon previously tested or investigated hypotheses and research ideas. However, a complete lack of clinical evidence on the safety or efficacy of a potential drug therapy or a novel surgical treatment modality presents a challenging knowledge gap. Bridging such knowledge should be based on sound conceptual or academic hypotheses. An exploratory or testable hypothesis-generating animal/pre-clinical research may be required in such cases.[13]
RESEARCH GAP IN VIEW OF THE REPLICATION CRISIS
The reproducibility or replication crisis in science is defined as the inability of other researchers to successfully replicate the findings of previously published studies, thus casting doubt on the validity of the original studies’ conclusions. It could also cast doubt on evidence linked to established scientific theories.[14,15] This applies to experimental, preclinical, and clinical research.[14,16] The potential causes of this reproducibility crisis have been attributed to inherent methodological or design weaknesses of the original studies, such as small or statistically underpowered sample sizes, improper implementation of statistical methods, publication bias, failure of strict adherence to uniform research reporting guidelines, and lack of information necessary to be reproduced, namely raw data and materials.[16-21] The notion that the reproducibility/replication crisis is an indicator of or synonymous with skeptical or unverified research findings has been challenged.[22,23] Arguably, successful research replication could be impractical or challenging, given the complex interaction between known and unknown confounding variables, environmental, and racial considerations, among other potentially uncontrollable real-time research settings [Figure 3].[14,22]
In addition, it is important to maintain a balance between local research resources and settings, and disease uncommonness on the one hand and the strict implementation of statistical protocols pertaining to powered sample size calculations.[12] Consequently, the reproducibility crisis has been attributed at least in part to substandard or questionable research practices in published studies, such as selective or unplanned collection, analysis, or reporting of data, e.g., P-hacking, failure to delineate a clear research gap, writing a biased introduction (citation bias), and linguistic spin of study conclusions, among others.[9,24] Substandard or questionable research practices could lead to the propagation of unverified and occasionally misleading study conclusions.[23,25] Spotting these substandard research practices could help uncover invaluable research gaps that can be filled by designing further studies geared toward enhancing reproducible and transparent research practices.
PITFALLS TO AVOID IN IDENTIFYING THE RESEARCH GAP
It is important to conduct a comprehensive, up-to-date literature search to identify all facets of the knowledge gap. In addition, an accurate and comprehensive delineation of a research gap necessitates a detailed assessment of the methodological quality of key and relevant studies. Basing decisions about the soundness of a study’s methodology and the validity of its results solely on abstracts can be misleading. It is imperative to consult the full text with a critical eye to pinpoint any methodological weaknesses or deficiencies, among others.[9,10,26,27] Failure to thoroughly read the full text of cited articles can cause misrepresentation of the existing literature. This is because the conclusions of abstracts occasionally contain unverified claims, undue generalizations, linguistic spin, missing data, and unjustified treatment recommendations.[7,9,10,26] Contrastingly, inaccurate citation practices – by authors of the citing article – can misrepresent or even contradict the conclusions or interpretations made by authors of the cited article. Such citation practices are common in the medical literature and can negatively impact the scientific integrity and credibility of the current medical literature.[25,28] Importantly, they can undermine the ability of authors to delineate a trustworthy research gap and research question.
Indirect citations are defined as a failure to read and cite the primary source of relevant information. Instead, one cites a secondary source that contains the relevant information. This is another likely means of dissemination of scientific misinformation.[28] Instead of resorting to indirect citations, authors are advised to methodically consult the primary source article. Similarly, methodologically flawed studies and predatory or questionable journals should not be used as sources of evidence for the existing research gap.[25,29] The above practices could easily distort the evidence and create an elusive or inflated research gap [Figure 4]. A checklist for identifying the constituents of a research gap is shown in Table 1.

- Identification of the research gap: Pitfalls to avoid.
| Research Gap Checklist |
| 1. Deficient evidence – No available evidence – Void research gap |
| • Description of a novel syndrome or disease. |
| • Description or testing of a novel diagnostic or treatment modality. |
| • Implementation of a known therapeutic or treatment modality in a different disease or population. |
| 2. Insufficient evidence – Evidence available but inadequate – Quantitative research gap |
| • Small sample sizes. |
| • Short follow-up periods. |
| • Uninvestigated disease variables or manifestations. |
| • Unimplemented outcome measures or tools, e.g., need for patient-reported measures, validation of non-validated ones. |
| • Logistic, administrative, and socioeconomic challenges leading to incomplete or missing information. |
| 3. Controversial evidence – Evidence available but inconclusive – Qualitative research gap |
| • Biased or misleading introduction (citation bias) and research gap. |
| • Inherent methodological design weaknesses, e.g., inappropriate selection of research type, failure to neutralize confounding variables. |
| • Statistically underpowered sample sizes. |
| • Non-adherence to reporting guidelines, e.g., lack of methodological details necessary to reproduce results. |
| • Selective collection of data to match the study’s hypothesis, e.g., biased sampling. |
| • Selective analysis or reporting of data to match the study’s hypothesis, e.g., P-hacking. |
| • Selective reporting of data to match the study’s hypothesis, e.g., reporting positive correlations only. |
| • Misreporting of conclusions, e.g., undue generalizations, linguistic spin, misinterpretation of statistical significance, among other unsupported claims. |
The checklist is applied according to the type of knowledge gap – deficient, insufficient, or controversial evidence. Each subtype is further detailed into essential revision items to ensure a comprehensive research design
The knowledge gap should be impartially presented to readers. That is, both sides of the literature controversy should be discussed methodically and contextually to avoid bias in reporting or interpreting the current literature. For instance, a biased introduction could distort the knowledge gap and the subsequent research question. Likewise, a biased discussion could arrive at misleading study conclusions.[8] This could occur consciously or subconsciously. To address this issue, researchers are advised to closely scrutinize the full texts of cited articles (references) to verify the claims, statements, and interpretations made by authors of the citing article and ensure that they are not misrepresented or underreported.[8,9,25] Publication and citation bias should be taken into consideration, as they could influence the research gap. In that, journals and authors may be more inclined to publish[30] or cite[31] articles with positive or affirmative conclusions than those with equivocal or negative ones. Researchers should exercise caution when assessing industry-sponsored interventional drug or device studies. This is particularly relevant to studies sponsored by the manufacturing company and to those in which the interpretation of results, conclusions, or clinical practice recommendations is positive.[32,33] This is because the reporting and interpretation of the results could be influenced by unperceived conflicts of interest. This could overestimate the true efficacy or efficiency of a treatment modality and blur the true knowledge gap.
CONCLUSION
Delineating a relevant research gap is an intricate and multifold process. Research gaps may arise from deficiencies in the research design, execution, or reporting of published studies. Therefore, study conclusions and interpretations should not be taken for granted. They should rather be weighed against the particulars of research design and execution. Basing research proposal decisions solely on unverified study conclusions and interpretations could lead to the delineation of irrelevant research gaps, wasteful research efforts, and propagation of inaccurate information. Accurate outlining of a relevant research gap requires competent academic critical appraisal skills by researchers. Envisioning research ideas that are relevant to clinical practice or public health requires a thorough and systematic reassessment of the existing literature for breaches of evidence and integrity.
Recommendations
Given the overwhelming challenges of controlling the sheer volume of medical publications in the digital era, prioritizing research education in medical schools and faculty training represents a more feasible strategy for enhancing researchers’ critical appraisal (peer review) skills.
Authors’ contributions:
TAE: Conceived and designed the study and wrote the manuscript draft. SM: Contributed to the study design. Both authors have critically reviewed and approved the final draft and are responsible for the manuscript’s content and similarity index.
Ethical approval:
Institutional Review Board approval is not required.
Declaration of patient consent:
Patient’s consent not required as there are no patients in this study.
Use of artificial intelligence (AI)-assisted technology for manuscript preparation:
The authors confirm that there was no use of AI-assisted technology for assisting in the writing or editing of the manuscript and no images were manipulated using AI.
Conflicts of interest:
There are no conflicting relationships or activities.
Financial support and sponsorship: This study did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.
References
- SQUARE-IT: A proposed approach to square the identified research problem in the literature with the objectives, the appropriate clinical research question, and the research hypothesis. BMC Med Res Methodol. 2025;25:19.
- [CrossRef] [PubMed] [Google Scholar]
- How to write and publish a research paper for a peer-reviewed journal. J Cancer Educ. 2021;36:909-13.
- [CrossRef] [PubMed] [Google Scholar]
- Essential guide to manuscript writing for academic dummies: An editor's perspective. Biochem Res Int. 2022;2022:1492058.
- [CrossRef] [PubMed] [Google Scholar]
- Quotation errors in high-impact-factor Orthopedic and sports medicine journals. JB JS Open Access. 2021;6:e21.00019.
- [CrossRef] [PubMed] [Google Scholar]
- An Author's Guide to Mastering Research Communication Skills: Introduction of a Medical Manuscript [Preprints] 2021:2021120191.
- [CrossRef] [Google Scholar]
- Long-term outcomes of multilevel surgery in adults with cerebral palsy: A prospective study. Gait Posture. 2024;113:70-1.
- [CrossRef] [Google Scholar]
- An “alarming” and “exceptionally high” rate of COVID-19 retractions? Account Res. 2021;28:58-9.
- [CrossRef] [PubMed] [Google Scholar]
- An author's guide to mastering academic writing skills: Discussion of a medical manuscript. J Musculoskelet Surg Res. 2021;5:227-34.
- [CrossRef] [Google Scholar]
- Classification and prevalence of spin in abstracts of non-randomized studies evaluating an intervention. BMC Med Res Methodol. 2015;15:85.
- [CrossRef] [PubMed] [Google Scholar]
- Overinterpretation and misreporting of prognostic factor studies in oncology: A systematic review. Br J Cancer. 2018;119:1288-96.
- [CrossRef] [PubMed] [Google Scholar]
- Low prevalence of spin in conclusions of interventional pediatric orthopedic studies. J Musculoskelet Surg Res. 2024;8:326-34.
- [CrossRef] [Google Scholar]
- What would be the effect of lowering the threshold of statistical significance from 0.05 to 0.005 in foot and ankle randomized controlled trials? Clin Orthop Relat Res. 2025;484:9-19.
- [CrossRef] [PubMed] [Google Scholar]
- General principles of preclinical study design. Handb Exp Pharmacol. 2020;257:55-69.
- [CrossRef] [PubMed] [Google Scholar]
- Challenges for assessing replicability in preclinical cancer biology. Elife. 2021;10:e67995.
- [CrossRef] [PubMed] [Google Scholar]
- Replication, a hallmark of good science: Unraveling the factors that predict replication success. Quant Methods Psychol. 2025;21:24-31.
- [CrossRef] [Google Scholar]
- Multivariable models in Orthopedic research: A methodological review of covariate selection and causal relationships. Osteoarthritis Cartilage. 2021;29:939-45.
- [CrossRef] [PubMed] [Google Scholar]
- Risk of bias in exercise science: A systematic review of 340 studies. iScience. 2024;27:109010.
- [CrossRef] [PubMed] [Google Scholar]
- Extraordinary claims in the literature on High-Intensity Interval Training (HIIT): I. Bonafide Scientific revolution or a looming crisis of replication and credibility? Sports Med. 2023;53:1865-90.
- [CrossRef] [PubMed] [Google Scholar]
- Reproducible and transparent research practices in published neurology research. Res Integr Peer Rev. 2020;5:5.
- [CrossRef] [PubMed] [Google Scholar]
- Evaluating reproducibility and transparency in emergency medicine publications. West J Emerg Med. 2021;22:963-71.
- [CrossRef] [PubMed] [Google Scholar]
- Statistical power analysis in exercise science. J Sports Sci. 2025;43:3046-62.
- [CrossRef] [PubMed] [Google Scholar]
- Enhancing reproducibility: Failures from reproducibility Initiatives underline core challenges. Biochem Pharmacol. 2017;138:7-18.
- [CrossRef] [PubMed] [Google Scholar]
- The crisis of confidence in research findings in psychology: Is lack of replication the real problem? Or is it something else? Arch Sci Psychol. 2016;4:32-7.
- [CrossRef] [Google Scholar]
- Exploring the gray area: Similarities and differences in questionable research practices (QRPs) across main areas of research. Sci Eng Ethics. 2021;27:40.
- [CrossRef] [PubMed] [Google Scholar]
- How accurate are citations of frequently cited papers in biomedical literature? Clin Sci (Lond). 2021;135:671-81.
- [CrossRef] [PubMed] [Google Scholar]
- Increasing use of promotional language in Orthopedic surgery abstracts-an analysis of 112,916 abstracts 1985 to 2020. J Am Acad Orthop Surg Glob Res Rev. 2024;8:e24.00109.
- [CrossRef] [PubMed] [Google Scholar]
- Reporting quality of abstracts and inconsistencies with full text articles in pediatric orthopedic publications. Res Integr Peer Rev. 2023;8:11.
- [CrossRef] [PubMed] [Google Scholar]
- Accuracy of cited “facts” in medical research articles: A review of study methodology and recalculation of quotation error rate. PLoS One. 2017;12:e0184727.
- [CrossRef] [PubMed] [Google Scholar]
- Predatory publishing in Orthopedic research. J Bone Joint Surg Am. 2018;100:e138.
- [CrossRef] [PubMed] [Google Scholar]
- Selective publication of antidepressant trials and its influence on apparent efficacy: Updated comparisons and meta-analyses of newer versus older trials. PLoS Med. 2022;19:e1003886.
- [CrossRef] [PubMed] [Google Scholar]
- Citation bias in imaging research: Are studies with higher diagnostic accuracy estimates cited more often? Eur Radiol. 2019;29:1657-64.
- [CrossRef] [PubMed] [Google Scholar]
- Industry sponsorship and research outcome. Cochrane Database Syst Rev. 2017;2:MR000033.
- [CrossRef] [PubMed] [Google Scholar]
- Evaluation of pharmaceutical company payments and conflict of interest disclosures among oncology clinical practice guideline authors in Japan. JAMA Netw Open. 2019;2:e192834.
- [CrossRef] [PubMed] [Google Scholar]

